Exercise 1: Subset your data according to the tissue type
assigned.
Exercise 2: Filter the samples to remove the low count genes.
Exercise 3: Run DESeq2 package to get DE genes.
Exercise 4: Use boxplot to see the distribution of the samples. What
do you observe?
Exercise 5: Visualize the results using MA-plot and
PCA.
Exercise 6: Save the results to a csv file.
Exercise 7: Create a volcano plot to visualize the DE genes.
Exercise 8: Perform GO enrichment (ORA analysis) on the DE genes(UP
and Down).
Exercise 9: Perform GSEA and use dot plot to visualize.
Exercise 10: Save your R script and R environment for
reproducibility.
Exercise 11: Create a GitHub repository and push your code
there.