All functions

MutantSets

MutantSets package

alias_samples()

alias_samples

barplotformatter()

barplotformatter

barplotformfun()

barplotformfun

chr_selectizer()

chr_selectizer

eff_extractor()

eff_extractor split multiple EFF strings into separate individual EFF strings and convert each to a row in a table

eff_parser()

eff_parser parsing snpeff strings EFF field see: http://snpeff.sourceforge.net/SnpEff_manual.html#eff

gen_del_tab()

gen_del_tab

gen_var_eff_DT()

gen_var_eff_DT Generates the datatable of predicted variant effects

gen_var_tab()

gen_var_tab

genotype_selector()

genotype_selector

get_genotype_class()

get_genotype_class

gtformatter()

gtformatter

gtformfun()

gtformfun

import_deletions()

import_deletions

launchApp()

launches the shinyAppDemo app

layout_ggplotly()

layout_ggplotly

loci_by_genotype()

loci_by_genotype

loci_plot()

loci_plot

mut_type_freq_plot()

mut_type_freq_plot

split_geno()

split_geno

variant_column_selector()

variant_column_selector

wormbase_view()

wormbase_view Generates an HTML embed tag for a wormbase 'jbrowse' session at the specified location, optinally with a region highlighted.